Image analysis in Biomedical Research (1ª edición)
Biomedical research often uses techniques that require image analysis (Western blot, measurements of biomolecules, morphometric analysis, MRI). Lack of knowledge on quantification tools reduces the information that can be obtained or results in biased quantification. The aim of this course is therefore, to provide the theoretical background on Image Analysis and to provide the studet the opportunity to practice under supervision with the Program ImageJ, one of the most used in Biomedical Research. The course is directed to postgraduate students in Biomedical sciences.
Session Nº 1: Image analysis introduction
Image acquisition, types and properties
Digital image and computer analysis
Stacks and Hyperstacks
Fiji-ImageJ software introduction
Histogram: utilities and modification
Practice: Overview of the FIJI software
Applied examples of the session and troubleshooting
Session Nº 2: Image Processing
Smoothen and noise filtering
Sharpening
Image operations
Fourier processing
Binary Image
Segmentation
Practice: Applied examples of the session and troubleshooting
Session Nº 3: Morphometric and Densitometric analysis
ROI: region of interest
Morphometric object selection
Count and outline objects
Morphometry parameters
Densitometry parameters
Object analysis
Practice: Applied examples of the session and troubleshooting
Session Nº 4: Plugging applications and automatization design (MACROS).
Complex processing and analysis
Tracking
3D reconstruction and visualization
ImageJ macro language
Ejemplos de Aplicación y problemas
Practice: Applied examples of the session and troubleshooting
Session Nº 5: Biomedical research project practical session
Application and troubleshooting of the course concepts to research projects proposed by the students.
Ignacio Monedero Cobeta: Fisiología UAM
Jose María González Granado: Fisiología UAM
Directed to postgraduate students in Biomedical sciences
To obtain a certificate the student will have to attend 80% of the sessions and an a positive evaluation exam of an image analysis protocol of a research project
Días: 5 días en total, del 30/05/2022 al 03/06/2022
Horario: 15:00-19:00
Lugar: Facultad de Medicina, Aula de informática
Image analysis in Biomedical Research (1ª edición) (Mátricula Ordinaria) 15€
*Para beneficiarse de la matrícula reducida, los estudiantes deben inscribirse con su correo institucional estudiante.uam.es*
NÚMERO DE PLAZAS OFERTADAS
Máximo 30 plazas
**El curso se impartirá si alcanza el mínimo de 11 estudiantes**
El curso tenía el objetivo de ser gratuito. Las tasas que se han establecido son para cubrir los cánones institucionales
Criterios:
- 70% situación de desempleo
- 30% expediente académico
Session Nº 1: Image analysis introduction
Image acquisition, types and properties
Digital image and computer analysis
Stacks and Hyperstacks
Fiji-ImageJ software introduction
Histogram: utilities and modification
Practice: Overview of the FIJI software
Applied examples of the session and troubleshooting
Session Nº 2: Image Processing
Smoothen and noise filtering
Sharpening
Image operations
Fourier processing
Binary Image
Segmentation
Practice: Applied examples of the session and troubleshooting
Session Nº 3: Morphometric and Densitometric analysis
ROI: region of interest
Morphometric object selection
Count and outline objects
Morphometry parameters
Densitometry parameters
Object analysis
Practice: Applied examples of the session and troubleshooting
Session Nº 4: Plugging applications and automatization design (MACROS).
Complex processing and analysis
Tracking
3D reconstruction and visualization
ImageJ macro language
Ejemplos de Aplicación y problemas
Practice: Applied examples of the session and troubleshooting
Session Nº 5: Biomedical research project practical session
Application and troubleshooting of the course concepts to research projects proposed by the students.